Ancient DNA : Methods and Protocols - Shapiro, Beth.; Barlow, Axel.; Heintzman, Peter D.; Hofreiter, Michael; Paijmans, Johanna L. A.; Soares, André E. R.; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2019)
Setting Up an Ancient DNA Laboratory -- Pretreatment: Removing DNA Contamination from Ancient Bones and Teeth Using Sodium Hypochlorite and Phosphate -- Pretreatment: Improving Endogenous Ancient DNA Yields Using a Simple Enzymatic Pre-Digestion Step -- Extraction of Highly Degraded DNA from Ancient Bones and Teeth -- Sampling and Extraction of Ancient DNA from Sediments -- Extraction of Ancient DNA from Plant Remains -- DNA Extraction from Keratin and Chitin -- Double-Stranded Library Preparation for Ancient and Other Degraded Samples -- A Method for Single-Stranded Ancient DNA Library Preparation -- Sequencing Library Preparation from Degraded Samples for Non-Illumina Sequencing Platforms -- Whole-Genome Capture of Ancient DNA Using Homemade Baits -- Generating RNA Baits for Capture-Based Enrichment -- Hybridization Capture of Ancient DNA Using RNA Baits -- Application of Solid-State Capture for the Retrieval of Small-to-Medium Sized Target Loci from Ancient DNA -- Targeted PCR Amplification and Multiplex Sequencing of Ancient DNA for SNP Analysis -- Targeted Amplification and Sequencing of Ancient Environmental and Sedimentary DNA -- Authentication and Assessment of Contamination in Ancient DNA -- Assembly of Ancient Mitochondrial Genomes without a Closely Related Reference Sequence.
Keywords: Genetics; Evolutionary biology; Genetics and Genomics; Evolutionary Biology