Chromatin Remodeling : Methods and Protocols - Morse, Randall H.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2012)
Strain Construction and Screening Methods for a Yeast Histone H3/H4 Mutant Library -- Measuring Dynamic Changes in Histone Modifications and Nucleosome Density during Activated Transcription in Budding Yeast -- Monitoring the Effects of Chromatin Remodelers on Long-Range Interactions In Vivo -- Measuring Nucleosome Occupancy In Vivo by Micrococcal Nuclease -- Analysis of Nucleosome Positioning Using a Nucleosome-Scanning Assay (NuSA) -- Assaying Chromatin Structure and Remodeling by Restriction Enzyme Accessibility -- Generation of DNA Circles in Yeast by Inducible Site-Specific Recombination -- An Efficient Purification System for Native Minichromosome from S. cerevisiae -- Simultaneous, Single-Molecule Detection of Endogenous C-5 DNA Methylation and Chromatin Accessibility Using MAPit -- Analysis of Stable and Transient Protein-Protein Interactions -- Monitoring Dynamic Binding of Chromatin Proteins In Vivo by Fluorescence Recovery after Photobleaching (FRAP) -- Monitoring Dynamic Binding of Chromatin Proteins In Vivo by Fluorescence Correlation Spectroscopy (FCS) and Temporal Image Correlation Spectroscopy (TICS) -- Analysis of Chromatin Structure in Plant Cells -- Analysis of Histones and Histone Variants in Plants -- Reconstitution of Modified Chromatin Templates for In Vitro Functional Assays -- A Defined In Vitro System to Study ATP-Dependent Remodeling of Short Chromatin Fibers -- In Vitro Reconstitution of In Vivo-Like Nucleosome Positioning on Yeast DNA -- Activator-Dependent Acetylation of Chromatin Model Systems -- Mapping Assembly-Favored and Remodeled Nucleosome Positions on Polynucleosomal Templates -- Analysis of Changes in Nucleosome Conformation Using Fluorescence Resonance Energy Transfer (FRET) -- Preparation of Nucleosomes Containing a Specific H2A-H2A Crosslink Forming a DNA-Constraining Loop Structure -- Sulfyhydryl Reactive Site-Directed Crosslinking as a Method for Probing the Tetrameric Structure of Histones H3 and H4 -- Genomic Approaches for Determining Nucleosome Occupancy in Yeast -- Genome-Wide Approaches to Determining Nucleosome Occupancy in Metazoans Using MNase-Seq -- Salt Fractionation of Nucleosomes for Genome-Wide Profiling -- Quantitative Analysis of Genome-Wide Chromatin Remodeling -- Computational Analysis of Nucleosome Positioning.
Keywords: Human genetics; Human Genetics