Bioinformatics : Volume II: Structure, Function and Applications - Keith, Jonathan M.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2008)
Structures -- UNAFold -- Protein Structure Prediction -- An Introduction to Protein Contact Prediction -- Analysis of Mass Spectrometry Data in Proteomics -- The Classification of Protein Domains -- Inferring Function -- Inferring Function from Homology -- The Rosetta Stone Method -- Inferring Functional Relationships from Conservation of Gene Order -- Phylogenetic Profiling -- Phylogenetic Shadowing -- Prediction of Regulatory Elements -- Expression and Microarrays -- Identifying Components of Complexes -- Integrating Functional Genomics Data -- Applications and Disease -- Computational Diagnostics with Gene Expression Profiles -- Analysis of Quantitative Trait Loci -- Molecular Similarity Concepts and Search Calculations -- Optimization of the MAD Algorithm for Virtual Screening -- Combinatorial Optimization Models for Finding Genetic Signatures from Gene Expression Datasets -- Genetic Signatures for a Rodent Model of Parkinson's Disease Using Combinatorial Optimization Methods -- Analytical and Computational Methods -- Developing Fixed-Parameter Algorithms to Solve Combinatorially Explosive Biological Problems -- Clustering -- Visualization -- Constructing Computational Pipelines -- Text Mining.
Keywords: Biochemistry; Bioinformatics; Statistics .; Human genetics; Biochemistry, general; Bioinformatics; Computational Biology/Bioinformatics.; Statistics for Life Sciences, Medicine, Health Sciences; Human Genetics