Bioinformatics for DNA Sequence Analysis - Posada, David; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2009)
Similarity Searching Using BLAST -- Gene Orthology Assessment with OrthologID -- Multiple Alignment of DNA Sequences with MAFFT -- SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences -- Selection of Models of DNA Evolution with jModelTest -- Estimating Maximum Likelihood Phylogenies with PhyML -- Trees from Trees: Construction of Phylogenetic Supertrees Using Clann -- Detecting Signatures of Selection from DNA Sequences Using Datamonkey -- Recombination Detection and Analysis Using RDP3 -- CodonExplorer: An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition -- Genetic Code Prediction for Metazoan Mitochondria with GenDecoder -- Computational Gene Annotation in New Genome Assemblies Using GeneID -- Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM -- Analysis of Genomic DNA with the UCSC Genome Browser -- Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree -- Analysis of Transposable Element Sequences Using CENSOR and RepeatMasker -- DNA Sequence Polymorphism Analysis Using DnaSP.
Keywords: Bioinformatics; Human genetics; Bioinformatics; Human Genetics