Bioinformatics for Comparative Proteomics - Wu, Cathy H.; Chen, Chuming; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2011)
Protein Bioinformatics Databases and Resources -- A Guide to UniProt for Protein Scientists -- InterPro Protein Classification -- Reactome Knowledgebase of Human Biological Pathways and Processes -- eFIP: A Tool for Mining Functional Impact of Phosphorylation from Literature -- A Tutorial on Protein Ontology Resources for Proteomic Studies -- Structure-Guided Rule-Based Annotation of Protein Functional Sites in UniProt Knowledgebase -- Modeling Mass Spectrometry-Based Protein Analysis -- Protein Identification from Tandem Mass Spectra by Database Searching -- LC-MS Data Analysis for Differential Protein Expression Detection -- Protein Identification by Spectral Networks Analysis -- Software Pipeline and Data Analysis for MS/MS Proteomics: The Trans-Proteomic Pipeline -- Analysis of High-Throughput ELISA Microarray Data -- Proteomics Databases and Repositories -- Preparing Molecular Interaction Data for Publication -- Submitting Proteomics Data to PRIDE Using PRIDE Converter Automated Data Integration and Determination of Posttranslational Modiﬁcations with the Protein Inference Engine -- An Integrated Top-Down and Bottom-Up Strategy for Broadly Characterizing Protein Isoforms and Modifications -- Phosphoproteome Resource for Systems Biology Research -- Protein-Centric Data Integration for Functional Analysis of Comparative Proteomics Data -- Integration of Proteomic and Metabolomic Profiling as well as Metabolic Modeling for the Functional Analysis of Metabolic Networks -- Time Series Proteome Profiling.
Keywords: Bioinformatics; Proteomics; Bioinformatics; Proteomics