Evolutionary Genomics : Statistical and Computational Methods - Anisimova, Maria; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2019)
Introduction to Genome Biology and Diversity -- Probability, Statistics, and Computational Science -- A Not-So-Long Introduction to Computational Molecular Evolution -- Whole-Genome Alignment -- Inferring Orthology and Paralogy -- Transposable Elements and Their Identification -- Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model -- Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life -- The Methodology Behind Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution -- Bayesian Molecular Clock Dating Using Genome-Scale Datasets -- Genome Evolution in Outcrossing vs. Selfing vs. Asexual Species -- Selection Acting on Genomes -- Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship between Model and Data -- Evolution of Viral Genomes: Interplay between Selection, Recombination, and Other Forces -- Evolution of Protein Domain Architectures -- New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans -- Association Mapping and Disease: Evolutionary Perspectives -- Ancestral Population Genomics -- Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN -- Multiple Data Analyses and Statistical Approaches for Analyzing Data from Metagenomic Studies and Clinical Trials -- Systems Genetics for Evolutionary Studies -- Analyzing Epigenome Data in Context of Genome Evolution and Human Diseases -- Semantic Integration and Enrichment of Heterogeneous Biological Databases -- High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE -- Scalable Workflows and Reproducible Data Analysis for Genomics -- Sharing Programming Resources between Bio* Projects.
Keywords: Bioinformatics; Genetics; Evolutionary biology; Bioinformatics; Genetics and Genomics; Evolutionary Biology