Computational Methods in Protein Evolution - Sikosek, Tobias; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2019)
Predicting the Effect of Mutations on Protein Folding and Protein-Protein Interactions -- Accurate Calculation of Free Energy Changes Upon Amino Acid Mutation -- Protocols for the Molecular Evolutionary Analysis of Membrane Protein Gene Duplicates -- Computational Prediction of De Novo Emerged Protein-Coding Genes -- Coevolutionary Signals and Structure-Based Models for the Prediction of Protein Native Conformations -- Detecting Amino Acid Coevolution with Bayesian Graphical Models -- Context-Dependent Mutation Effects in Proteins -- High-Throughput Reconstruction of Ancestral Protein Sequence, Structure, and Molecular Function -- Ancestral Sequence Reconstruction as a Tool for the Elucidation of a Stepwise Evolutionary Adaptation -- Enhancing Statistical Multiple Sequence Alignment and Tree Inference using Structural Information -- The Influence of Protein Stability on Sequence Evolution: Applications to Phylogenetic Inference -- Navigating Among Known Structures in Protein Space -- A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat-Protein Families -- Exploring Enzyme Evolution from Changes in Sequence, Structure, and Function -- Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment -- A Roadmap to Domain Based Proteomics -- Modelling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information -- Interface-Based Structural Prediction of Novel Host-Pathogen Interactions -- Predicting Functions of Disordered Proteins with MoRFpred -- Exploring Protein Conformational Diversity -- High-Throughput Antibody Structure Modelling and Design using ABodyBuilder -- In Silico Directed Evolution using CADEE.
Keywords: Proteins .; Protein Science