Computer Optimized Microscopy : Methods and Protocols - Rebollo, Elena; Bosch, Manel; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2019)
Main Steps in Image Processing and Quantification: The Analysis Workflow -- Open Source Tools for Biological Image Analysis -- Proximity Ligation Assay Image Analysis Protocol: Addressing Receptor-Receptor Interactions -- Introduction to ImageJ Macro Language in a Particle Counting Analysis: Automation Matters -- Automated Macro Approach to Quantify Synapse Density in 2D Confocal Images from Fixed Immunolabeled Neural Tissue Sections -- Automated Quantitative Analysis of Mitochondrial Morphology -- Structure and Fluorescence Intensity Measurements in Biofilms -- 3D+Time Imaging and Image Reconstruction of Pectoral Fin during Zebrafish Embryogenesis -- Automated Macro Approach to Remove Vitelline Membrane Autofluorescence in Drosophila Embryo 4D Movies -- Which Elements to Build Co-Localization Workflows? From Metrology to Analysis -- A Triple Colocalization Approach to Assess Traffic Patterns and their Modulation -- Photobleaching and Sensitized Emission Based Methods for the Detection of Förster Resonance Energy Transfer -- In Vivo Quantification of Intramolecular FRET using RacFRET Biosensors Manel -- Cell Proliferation High-Content Screening on Adherent Cell Cultures -- HCS Methodology for Helping in Lab Scale Image-Based Assays -- Filopodia Quantification using FiloQuant -- Coincidence Analysis of Molecular Dynamics by Raster Image Correlation -- 3D Tracking of Migrating Cells from Live Microscopy Time-Lapses -- A Cell Segmentation/Tracking Tool Based on Machine Learning -- 2D+Time Object Tracking using Fiji and ilastik -- Machine Learning: Advanced Image Segmentation using ilastik.
Keywords: Radiology; Microscopy; Imaging / Radiology; Biological Microscopy