Data Mining for Systems Biology : Methods and Protocols - Mamitsuka, Hiroshi; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2018)
Identifying Bacterial Strains from Sequencing Data -- MetaVW: Large-Scale Machine Learning for Metagenomics Sequence Classification -- Online Interactive Microbial Classification and Geospatial Distributional Analysis Using BioAtlas -- Generative Models for Quantification of DNA Modifications -- DiMmer: Discovery of Differentially Methylated Regions in Epigenome-Wide Association Study (EWAS) Data -- Implementing a Transcription Factor Interaction Prediction System Using the GenoMetric Query Language -- Multiple Testing Tool to Detect Combinatorial Effects in Biology -- SiBIC: A Tool for Generating a Network of Biclusters Captured by Maximal Frequent Itemset Mining -- Computing and Visualizing Gene Function Similarity and Coherence with NaviGO -- Analyzing Glycan Binding Profiles Using Weighted Multiple Alignment of Trees -- Analysis of Fluxomic Experiments with Principal Metabolic Flux Mode Analysis -- Analyzing Tandem Mass Spectra Using the DRIP Toolkit: Training, Searching, and Post-Processing -- Sparse Modeling to Analyze Drug-Target Interaction Networks -- DrugE-Rank: Predicting Drug-Target Interactions by Learning to Rank -- MeSHLabeler and DeepMeSH: Recent Progress in Large-Scale MeSH Indexing -- Disease Gene Classification with Metagraph Representations -- Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG.
Keywords: Bioinformatics; Bioinformatics