Copy Number Variants : Methods and Protocols - Bickhart, Derek M.; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2018)
Identification of Copy Number Variants from SNP Arrays using PennCNV -- Using SAAS-CNV to Detect and Characterize Somatic Copy Number Alterations in Cancer Genomes from Next Generation Sequencing and SNP Array Data -- Statistical Detection of Genome Differences Based on CNV Segment -- Whole Genome Shotgun Sequence CNV Detection using Read Depth -- Read Depth Analysis to Identify CNV in Bacteria using CNOGpro -- Using HaMMLET for Bayesian Segmentation of WGS read-depth Data -- Split-Read InDel and Structural Variant Calling Using PINDEL -- Detecting Small Inversions using SRinversion -- Detection of CNVs in NGS data using VS-CNV -- Structural Variant Breakpoint Detection with novoBreak -- Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures -- Versatile Identification of Copy Number Variants with Canvas -- Analysis of Population-genetic Properties of Copy Number Variations -- Validation of Genomic Structural Variants through Long Sequencing Technologies -- Structural Variation Detection and Analysis using Bionano Optical Mapping.
Keywords: Bioinformatics; Bioinformatics