Enhancer RNAs : Methods and Protocols - Ørom, Ulf Andersson; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2017)
Cellular Fractionation and Isolation of Chromatin-associated RNA -- Knockdown of Nuclear-located Enhancer RNAs and Long ncRNAs using Locked Nucleic Acid GapmeRs -- Visualization of Enhancer-derived Non-coding RNA -- UV-RNA Immunoprecipitation (UV-RIP) Protocol in Neurons -- Mapping Long non-coding RNA Chromatin Occupancy using Capture Hybridization Analysis of RNA Targets (CHART) -- Detecting long-range Enhancer-promoter Interactions by Quantitative Chromosome Conformation Capture -- Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET) -- Identification of Transcribed Enhancers by Genome-wide Chromatin Immunoprecipitation Sequencing -- Global Run-On sequencing (GRO-seq) -- Computational Approaches for Mining GRO-seq Data to Identify and Characterize Active Enhancers -- Evaluating the Stability of mRNAs and Non-coding RNAs -- A Novel Method to Quantify RNA-protein Interactions in situ using FMTRIP and Proximity Ligation -- In silico Promoter Recognition from deepCAGE data -- Bioinformatics Pipeline for Transcriptome Sequencing Analysis -- CRISPR/Cas-9 Genome Editing in Embryonic Stem Cells -- Targeted Gene Activation Using RNA-Guided Nucleases.
Keywords: Human genetics; Human Genetics