Functional Proteomics : Methods and Protocols - Thompson, Julie D.; Schaeffer-Reiss, Christine; Ueffing, Marius; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2008)
A Brief Summary of the Different Types of Mass Spectrometers Used in Proteomics -- Experimental Setups and Considerations to Study Microbial Interactions -- Proteomics -- Plant Proteomics -- Methods for Human CD8+ T Lymphocyte Proteome Analysis -- Label-Free Proteomics of Serum -- Flow Cytometric Analysis of Cell Membrane Microparticles -- Protein Expression Profiling -- Exosomes -- Toward a Full Characterization of the Human 20S Proteasome Subunits and Their Isoforms by a Combination of Proteomic Approaches -- Free-Flow Electrophoresis of the Human Urinary Proteome -- Versatile Screening for Binary Protein-Protein Interactions by Yeast Two-Hybrid Mating -- Native Fractionation: Isolation of Native Membrane-Bound Protein Complexes from Porcine Rod Outer Segments Using Isopycnic Density Gradient Centrifugation -- Mapping of Signaling Pathways by Functional Interaction Proteomics -- Selection of Recombinant Antibodies by Eukaryotic Ribosome Display -- Production of Protein Arrays by Cell-Free Systems -- Nondenaturing Mass Spectrometry to Study Noncovalent Protein/Protein and Protein/Ligand Complexes: Technical Aspects and Application to the Determination of Binding Stoichiometries -- Protein Processing Characterized by a Gel-Free Proteomics Approach -- Identification and Characterization of N-Glycosylated Proteins Using Proteomics -- Protein Analysis -- Data Standards and Controlled Vocabularies for Proteomics -- The PRIDE Proteomics Identifications Database: Data Submission, Query, and Dataset Comparison -- Searching the Protein Interaction Space Through the MINT Database -- PepSeeker: Mining Information from Proteomic Data -- Toward High-Throughput and Reliable Peptide Identification via MS/MS Spectra -- MassSorter: Peptide Mass Fingerprinting Data Analysis -- Database Similarity Searches -- Protein Multiple Sequence Alignment -- Discovering Biomedical Knowledge from the Literature -- Protein Subcellular Localization Prediction Using Artificial Intelligence Technology -- Protein Functional Annotation by Homology -- Designability and Disease -- Prism: Protein-Protein Interaction Prediction by Structural Matching -- Prediction of Protein Interaction Based on Similarity of Phylogenetic Trees -- Large Multiprotein Structures Modeling and Simulation: The Need for Mesoscopic Models -- Dynamic Pathway Modeling of Signal Transduction Networks: A Domain-Oriented Approach.
Keywords: Biochemistry; Proteins .; Proteomics; Mass spectrometry; Biochemistry, general; Protein Science; Proteomics; Mass Spectrometry