Gene Mapping, Discovery, and Expression : Methods and Protocols - Bina, Minou; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2006)
Use of Genome Browsers to Locate Your Favorite Genes -- Methods for Identifying and Mapping Recent Segmental and Gene Duplications in Eukaryotic Genomes -- Identification and Mapping of Paralogous Genes on a Known Genomic DNA Sequence -- Quantitative DNA Fiber Mapping in Genome Research and Construction of Physical Maps -- PRINS for Mapping Single-Copy Genes -- VISTA Family of Computational Tools for Comparative Analysis of DNA Sequences and Whole Genomes -- Computational Prediction of cis-Regulatory Modules from Multispecies Alignments Using Galaxy, Table Browser, and GALA -- Comparative Promoter Analysis in Vertebrate Genomes With the CORG Workbench -- cis-Regulatory Region Analysis Using BEARR -- A Database of 9-Mers from Promoter Regions of Human Protein-Coding Genes -- A Program Toolkit for the Analysis of Regulatory Regions of Genes -- Analysis of Allele-Specific Gene Expression -- Construction of microRNA-Containing Vectors for Expression in Mammalian Cells -- Mining Microarray Data at NCBI's Gene Expression Omnibus (GEO)* -- The Stanford Microarray Database -- Detecting Nucleosome Ladders on Unique DNA Sequences in Mouse Liver Nuclei -- DNA Methyltransferase Probing of DNA-Protein Interactions -- Protein Binding Microarrays (PBMs) for Rapid, High-Throughput Characterization of the Sequence Specificities of DNA Binding Proteins -- Quantitative Profiling of Protein-DNA Binding on Microarrays -- Analysis of Protein-DNA Binding by Streptavidin-Agarose Pulldown -- Isolation and Mass Spectrometry of Specific DNProteins -- Isolation of Transcription Factor Complexes by In Vivo Biotinylation Tagging and Direct Binding to Streptavidin Beads.
Keywords: Biochemistry; Cell biology; Biochemistry, general; Cell Biology