Environmental Microbiology : Methods and Protocols - Paulsen, Ian T.; Holmes, Andrew J.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2014)
Methods for Isolation and Cultivation of Filamentous Fungi -- Rapid Extraction of PCR-Competent DNA from Recalcitrant Environmental Samples -- Quantitative PCR for Detection of mRNA and gDNA in Environmental Isolates -- Analysis of Community Dynamics in Environmental Samples Using Denaturing Gradient Gel Electrophoresis -- Terminal Restriction Fragment Length Polymorphism (T-RFLP) Profiling of Bacterial 16S rRNA Genes -- Profiling the Diversity of Microbial Communities with Single-Strand Conformation Polymorphism (SSCP) -- Human Fecal Source Identification with Real-Time Quantitative PCR -- Next Generation Barcode Tagged Sequencing for Monitoring Microbial Community Dynamics -- Analysis of Methanotroph Community Structure Using a pmoA-Based Microarray -- Biolog Phenotype MicroArrays for Phenotypic Characterization of Microbial Cells -- Visualization of Metabolic Properties of Bacterial Cells Using Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS) -- Single-Cell Raman Sorting -- Bacterial Whole Cell Biosensors for the Detection of Contaminants in Water and Soils -- Stable Isotope Probing to Study Functional Components of Complex Microbial Ecosystems -- Metagenomics Using Next-Generation Sequencing -- Targeted Genomics of Flow Cytometrically Sorted Cultured and Uncultured Microbial Groups -- Quantitative Microbial Metatranscriptomics -- Quantitative Metaproteomics: Functional Insights into Microbial Communities.
Keywords: Microbiology; Environmental sciences; Microbiology; Environmental Science and Engineering