Modeling Peptide-Protein Interactions : Methods and Protocols - Schueler-Furman, Ora.; London, Nir.; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2017)
The Usage of ACCLUSTER for Peptide Binding Site Prediction -- Detection of Peptide-Binding Sites on Protein Surfaces using the Peptimap Server -- Peptide Sub-Optimal Conformation Sampling for the Prediction of Protein-Peptide Interactions -- Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock -- Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Protein-Peptide Interactions -- Highly Flexible Protein-Peptide Docking Using CABS-Dock -- AnchorDock for Blind Flexible Docking of Peptides to Proteins -- Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK -- Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock & FlexPepBind -- Flexible Backbone Methods for Predicting and Designing Peptide Specificity -- SImplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models -- Binding Specificity Profiles from Computational Peptide Screening -- Enriching Peptide Libraries for Binding Affinity and Specificity through Computationally Directed Library Design -- Investigating Protein-Peptide Interactions Using the Schrödinger Computational Suite -- Identifying Loop-Mediated Protein-Protein Interactions using LoopFinder -- Protein-Peptide Interaction Design: PepCrawler and PinaColada -- Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions.
Keywords: Proteins .; Protein Science