Multiple Sequence Alignment Methods - Russell, David J.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2014)
Dynamic Programming -- Heuristic Alignment Methods -- Objective Functions -- An Appraisal of Benchmarks for Multiple Sequence Alignment -- BLAST and FASTA Similarity Searching for Multiple Sequence Alignment -- Clustal Omega, Accurate Alignment of Very Large Numbers of Sequences -- T-COFFEE: Tree-Based Consistency Objective Function for Alignment Evaluation -- MAFFT: Iterative Refinement and Additional Methods -- Multiple Sequence Alignment Using Probcons and Probalign -- Phylogeny-Aware Alignment with PRANK -- GramAlign: Fast Alignment Driven by Grammar-Based Phylogeny -- Multiple Sequence Alignment with DIALIGN -- PicXAA: A Probabilistic Scheme for Finding the Maximum Expected Accuracy Alignment of Multiple Biological Sequences -- Multiple Protein Sequence Alignment with MSAProbs -- Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé -- PRALINE: A Versatile Multiple Sequence Alignment Toolkit -- PROMALS3D: Multiple Protein Sequence Alignment Enhanced with Evolutionary and 3-Dimensional Structural Information -- MSACompro: Improving Multiple Protein Sequence Alignment by Predicted Structural Features.
Keywords: Bioinformatics; Bioinformatics