Plant Gene Regulatory Networks : Methods and Protocols - Kaufmann, Kerstin; Mueller-Roeber, Bernd; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2017)
From Genes to Networks: Characterizing Gene-Regulatory Interactions in Plants -- Inducible Promoter Systems for Gene Perturbation Experiments in Arabidopsis -- Cell Type-Specific Gene Expression Profiling Using Fluorescence-Activated Nuclear Sorting -- Characterization of Cell Type-Specific DNA Binding Sites of Plant Transcription Factors using Chromatin Immunoprecipitation -- Yeast One and Two Hybrid High-Throughput Screenings using Arrayed Libraries -- SELEX-Seq: A Method to Determine DNA-Binding Specificities of Plant Transcription Factors -- Analysis of a Plant Transcriptional Regulatory Network using Transient Expression Systems -- Analysis of In Vivo Chromatin and Protein Interactions of Arabidopsis Transcript Elongation Factors -- Characterization of Mediator Complex and its Associated Proteins from Rice -- DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing -- In Situ Hi-C Library Preparation for Plants to Study their Three-Dimensional Chromatin Interactions on a Genome-Wide Scale -- Multiplexed Transcriptional Activation or Repression in Plants using CRISPR-dCas9 Based Systems -- Generation of dTALEs and Libraries of Synthetic TALE-Activated Promoters for Engineering of Gene Regulatory Networks in Plants -- Design of Knowledge Bases for Plant Gene Regulatory Networks -- AraNet: A Network Biology Server for Arabidopsis thaliana and Other Non-Model Plant Species -- Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development -- Predicting Transcription Factor-Binding Sites and their Cognate Transcription Factors using Gene Expression Data -- Computational Approaches to Study Gene Regulatory Networks -- Boolean Dynamic Modeling Approaches to Study Plant Gene Regulatory Networks: Integration, Validation and Prediction -- ODE-Based Modeling of Complex Regulatory Circuits -- Inferring Gene Regulatory Networks in the Arabidopsis Root using a Dynamic Bayesian Network Approach.
Keywords: Plant science; Botany; Plant Sciences