Plant Proteomics : Methods and Protocols - Jorrin-Novo, Jesus V.; Komatsu, Setsuko; Weckwerth, Wolfram; Wienkoop, Stefanie; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2014)
Plant Proteomics Methods and Protocols -- From Proteomics to Systems Biology: MAPA, MASS WESTERN, PROMEX and COVAIN as a User-Oriented Platform -- Plant Proteomics: From Genome Sequencing to Proteome Databases and Repositories -- How to Use 2D Gel Electrophoresis in Plant Proteomics -- Standarization of Data Processing and Statistical Analysis in a 2-DE-Based Comparative Plant Proteomics Experiment -- The Expanding Universe of Mass Analyzer Configurations for Biological Analysis -- A Protocol for Protein Extraction from Lipid-Rich Plant Tissues Suitable for Electrophoresis -- Making a Protein Extract in Plant Pathogenic Fungi for Gel- and LC-Based Proteomics -- Plant Proteomics Methods to Reach Low-Abundance Proteins -- Combination of 2DE and LC for Plant Proteomics Analysis -- 2DE Analysis of Forest Tree Proteins Using Fluorescent Labels and Multiplexing -- Differential Plant Proteome Analysis by Isobaric Tags for Relative and Absolute Quantitation (iTRAQ) -- Global Quantitative Proteomics Using Spectral Counting: An Inexpensive Experimental and Bioinformatics Workflow for Deep Proteome Coverage -- Combining Chymotrypsin/trypsin Digestion to Identify Hydrophobic Proteins from Oil Bodies -- Mass Western for Absolute Quantification of Target Proteins and Considerations About the Instrument of Choice -- Selected Reaction Monitoring Mass Spectrometry: A Methodology Overview -- Mass Spectrometry Based Imaging of Metabolites and Proteins -- Using the Yeast Two-Hybrid System to Identify Protein-Protein Interactions -- Modifications of Wheat Germ Cell-Free System for Functional Proteomics of Plant Membrane Proteins -- Arabidopsis Proteomics: A Simple and Standardizable Workflow for Quantitative Proteome Characterization -- Analysis of Rice Proteins Using SDS-PAGE Shotgun Proteomics -- Medicago truncatula Proteomics for Systems Biology: Novel Rapid Shotgun LC-MS Approach for Relative Quantification Based on Full-Scan Selective Peptide Extraxtion (Selpex) -- Soybean Proteomics -- Proteome Analysis of Orphan Plant Species, Fact or Fiction? -- An Improved Detergent-Compatible Gel-Fractionation LC-LTQ-Orbitrap-MS Workflow for Plant and Microbial Proteomics -- Seed Proteomics -- Back to Osborne. Sequential Protein Extraction and LC-MS for Characterization of the Seed Proteome -- Xylem Sap Proteomics -- Suspension Cultured-Plant Cells as a Tool to Analyze the Extracellular Proteome -- Pollen Cultivation and Preparation for Proteome Studies -- Isolation of the Plant Cytosolic Fraction for Proteomic Analysis -- Quantitative Proteomic Analysis of Intact Plastids -- Shotgun Proteomics of Plant Plasma Membrane and Microdomain Proteins Using Nano-LC-MS/MS -- Plant Mitochondrial Proteomics -- Separation of the Plant Golgi Apparatus and Endoplasmic Reticulum by Free-Flow Electrophoresis -- Isolation of Leaf Peroxisomes from Arabidopsis for Organelle Proteomics Analyses -- Proteomics of Field Samples, the Case of the Chernobyl Area -- Differential Proteome and Secretome Analysis During Rice-Pathogen Interaction -- Protein Extraction and Gel-Based Separation Methods to Analyse Responses to Pathogens in Carnation (Dianthus caryophyllus L) -- StageTip-Based HAMMOC, an Efficient and Inexpensive Phosphopeptide Enrichment Method for Plant Shotgun Phosphoproteomics -- Simultaneous Identification and Quantification of Nitrosylation Sites by Combination of Biotin Switch and ICAT Labeling -- Tandem Metal-Oxide Affinity Chromatography for Enhanced Depth of Phosphoproteome Analysis -- N-Glycoprotein Enrichment by Lectin Affinity Chromatography -- Rapid and High-Throughput N-glycomic Analysis of Plant Glycoproteins -- Assay for Proteasome-Dependent Protein Degradation and Ubiquitinated Proteins -- Separation of Membrane Protein Complexes by Native LDS-PAGE -- Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags -- Class III Peroxidases -- Proteotyping of Holm oak (Quercus ilex subsp. ballota) Provenances Through Proteomic Analysis of Acorn Flour -- Immunoproteomics Analysis of Food Allergens -- Beer and Wort Proteomics -- Precipitation of Champagne Base Wine Proteins Prior 2D Electrophoresis -- The Minimal Information About a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative.
Keywords: Plant science; Botany; Proteomics; Plant Sciences; Proteomics