RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods - Gorodkin, Jan.; Ruzzo, Walter L.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2014)
Concepts and Introduction to RNA Bioinformatics -- The Principles of RNA Structure Architecture -- The Determination of RNA Folding Nearest Neighbor Parameters -- Energy Directed RNA Structure Prediction -- Introduction to Stochastic Context Free Grammars -- An Introduction to RNA Databases -- Energy-based RNA Consensus Secondary Structure Prediction in Multiple Sequence Alignments -- SCFGs in RNA Secondary Structure Prediction: A Hands-on Approach -- Annotating Functional RNAs in Genomes using Infernal -- Class-specific Prediction of ncRNAs -- Abstract Shape Analysis of RNA -- Introduction to RNA Secondary Structure Comparison -- RNA Structural Alignments, Part I: Sankoff Based Approaches for Structural Alignments -- RNA Structural Alignments, Part II: Non-Sankoff Approaches for Structural Alignments -- De novo Discovery of Structured ncRNA Motifs in Genomic Sequences.,- Phylogeny and Evolution of RNA Structure -- The Art of Editing RNA Structural Alignments -- Automated Modeling of RNA 3D Structure -- Computational Prediction of RNA-RNA Interactions -- Computational Prediction of microRNA Genes -- MicroRNA Target Finding by Comparative Genomics -- Bioinformatics of siRNA Design -- RNA-protein Interactions: An Overview.
Keywords: Bioinformatics; Human genetics; Bioinformatics; Human Genetics