Proteome Bioinformatics - Hubbard, Simon J.; Jones, Andrew R.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2010)
An Introduction to Proteome Bioinformatics -- Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting -- Computational Approaches to Peptide Identification via Tandem MS -- Scoring and Validation of Tandem MS Peptide Identification Methods -- Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics -- Understanding and Exploiting Peptide Fragment Ion Intensities Using Experimental and Informatic Approaches -- Spectral Library Searching for Peptide Identification via Tandem MS -- De Novo Sequencing Methods in Proteomics -- Cross Species Proteomics -- Gene Model Detection Using Mass Spectrometry -- Signal Processing in Proteomics -- A High-Performance Reconfigurable Computing Solution for Peptide Mass Fingerprinting -- Mining Proteomic MS/MS Data for MRM Transitions -- OpenMS and TOPP: Open Source Software for LC-MS Data Analysis -- Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis -- Informatics and Statistics for Analyzing 2-D Gel Electrophoresis Images -- Automated Generic Analysis Tools for Protein Quantitation Using Stable Isotope Labeling -- An Overview of Label-Free Quantitation Methods in Proteomics by Mass Spectrometry -- The PeptideAtlas Project -- Using the PRIDE Proteomics Identifications Database for Knowledge Discovery and Data Analysis -- Molecular Interactions and Data Standardisation -- Mass Spectrometer Output File Format mzML -- Managing Experimental Data Using FuGE -- Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats -- Computational Resources for the Prediction and Analysis of Native Disorder in Proteins.
Keywords: Computers; Proteins .; Bioinformatics; Proteomics; Theory of Computation; Protein Science; Bioinformatics; Proteomics