Systems Metabolic Engineering : Methods and Protocols - Alper, Hal S.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2013)
Genome-Scale Model Management and Comparison -- Automated Genome Annotation and Metabolic Model Reconstruction in the SEED and Model SEED -- Metabolic Model Refinement Using Phenotypic Microarray Data -- Linking Genome-Scale Metabolic Modeling and Genome Annotation -- Resolving Cell Composition through Simple Measurements, Genome-Scale Modeling, and a Genetic Algorithm -- A Guide to Integrating Transcriptional Regulatory and Metabolic Networks Using PROM (Probabilistic Regulation of Metabolism) -- Kinetic Modeling of Metabolic Pathways: Application to Serine Biosynthesis -- Computational Tools for Guided Discovery and Engineering of Metabolic Pathways -- Retrosynthetic Design of Heterologous Pathways -- Customized Optimization of Metabolic Pathways by Combinatorial Transcriptional Engineering -- Adaptive Laboratory Evolution for Strain Engineering -- Trackable Multiplex Recombineering for Gene-Trait Mapping in E. coli -- Identification of Mutations in Evolved Bacterial Genomes -- Discovery of Post-Transcriptional Regulatory RNAs Using Next Generation Sequencing Technologies -- 13C-based Metabolic Flux Analysis: Fundamentals and Practice -- Nuclear Magnetic Resonance Methods for Metabolic Fluxomics -- Using Multiple Tracers for 13C Metabolic Flux Analysis -- Isotopically Nonstationary 13C Metabolic Flux Analysis -- Sample Preparation and Biostatistics for Integrated Genomics Approaches -- Targeted Metabolic Engineering Guided by Computational Analysis of Single Nucleotide Polymorphisms (SNPs) -- Linking RNA Measurements and Proteomics with Genome-Scale Models -- Comparative Transcriptome Analysis for Metabolic Engineering -- Merging Multiple Omics Datasets In Silico: Statistical Analyses and Data Interpretation.
Keywords: Biotechnology; Metabolism; Biotechnology; Microengineering; Metabolomics