Yeast Systems Biology : Methods and Protocols - Oliver, Stephen G.; Castrillo, Juan I.; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2019)
Yeast Systems Biology: The Continuing Challenge of Eukaryotic Complexity -- Capture of Ribonucleotides in Yeast Genomic DNA using Ribose-Seq -- Method for Multiplexed Integration of Synergistic Alleles and Metabolic Pathways in Yeasts via CRISPR-Cas9 -- Ultra-High-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate -- Epi-ID: Systematic and Direct Screening for Chromatin Regulators in Yeast by Barcode ChIP-Seq -- Transcript Profiling Analysis through Paired-End Ditag (PET) Approach Coupled with Deep Sequencing Revealing Transcriptome Complexity in Yeast -- RNA Sequencing Best Practices: Experimental Protocol and Data Analysis -- Advanced Methods for the Analysis of Altered Pre-mRNA Splicing in Yeast and Disease -- PAT-Seq: A Method for Simultaneous Quantitation of Gene Expression, Poly(A)-Site Selection and Poly(A) Length-Distribution in Yeast Transcriptomes -- Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution using hyperLOPIT -- Data-Independent Acquisition for Yeast Glycoproteomics -- Protein-Protein Interaction Profiling in Candida albicans Revealed by Biochemical Purification-Mass Spectrometry (BP/MS) -- Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges -- Metabolomic Analysis of Yeast and Human Cells: Latest Advances and Challenges -- Measuring the Activity of Plasma Membrane and Vacuolar Transporters in Yeast -- Self-Establishing Communities: A Yeast Model to Study the Physiological Impact of Metabolic Cooperation in Eukaryotic Cells -- Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices -- Rational Design and Methods of Analysis for the Study of Short- and Long-Term Dynamic Responses of Eukaryotic Systems -- Genome-Scale Metabolic Modeling from Yeast to Human Cell Models of Complex Diseases: Latest Advances and Challenges -- Next-Generation Genome-Scale Models Incorporating Multilevel 'omics Data: From Yeast to Human -- Advanced Modeling of Cellular Proliferation: Towards a Multi-Scale Framework Coupling Cell Cycle to Metabolism by Integrating Logical and Constraint-Based Models -- Yeast Genome Screening and Methods for the Discovery of Metabolism Pathways Involved in a Phenotypic Response to Anti-Cancer Agents -- Advanced Yeast Models of Familial Alzheimer Disease Expressing FAD-Linked Presenilin to Screen Mutations and g-Secretase Modulators -- From Yeast-to-Humans: Leveraging New Approaches in Yeast to Accelerate Discovery of Therapeutic Targets for Synucleinopathies.
Keywords: Systems biology; Microbiology; Systems Biology; Microbiology