Yeast Systems Biology : Methods and Protocols - Castrillo, Juan I.; Oliver, Stephen G.; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2011)
Yeast Systems Biology: The Challenge of Eukaryotic Complexity -- Saccharomyces cerevisiae: Gene Annotation and Genome Variability, State-of-the-Art Through Comparative Genomics -- Genome-Wide Measurement of Histone H3 Replacement Dynamics in Yeast -- Genome-Wide Approaches to Studying Yeast Chromatin Modifications -- Absolute and Relative Quantification of mRNA Expression (Transcript Analysis) -- Enrichment of Unstable Non-Coding RNAs and Their Genome-Wide Identification -- Genome-Wide Transcriptome Analysis in Yeast Using High-Density Tiling Arrays -- RNA Sequencing -- Polyadenylation State Microarray (PASTA) Analysis -- Enabling Technologies for Yeast Proteome Analysis -- Protein Turnover Methods in Single-Celled Organisms: Dynamic SILAC -- Protein-Protein Interactions and Networks: Forward and Reverse Edgetics -- Use of Proteome Arrays to Globally Identify Substrates for E3 Ubiquitin Ligases -- Fit for Purpose Quenching and Extraction Protocols for Metabolic Profiling of Yeast Using Chromatography-Mass Spectrometry Platforms -- The Automated Cell: Compound and Environment Screening System (ACCESS) for Chemogenomic Screening -- Competition Experiments Coupled with High-Throughput Analyses for Functional Genomics Studies in Yeast -- Fluorescence Fluctuation Spectroscopy and Imaging Methods for Examination of Dynamic Protein Interactions in Yeast -- Nutritional Control of Cell Growth Via TOR Signaling in Budding Yeast -- Computational Yeast Systems Biology: A Case Study for the MAP Kinase Cascade -- Standards, Tools, and Databases for the Analysis of Yeast 'Omics Data -- A Computational Method to Search for DNA Structural Motifs in Functional Genomic Elements -- High Throughput Analyses and Curation of Protein Interactions in Yeast -- Noise in Biological Systems: Pros, Cons, and Mechanisms of Control -- Genome-Scale Integrative Data Analysis and Modeling of Dynamic Processes in Yeast -- Genome-Scale Metabolic Models of Saccharomyces cerevisiae -- Representation, Simulation, and Hypothesis Generation in Graph and Logical Models of Biological Networks -- Use of Genome-Scale Metabolic Models in Evolutionary Systems Biology -- Saccharomyces cerevisiae Contributions Towards Understanding Mammalian Gene Function and Therapy.
Keywords: Microbiology; Gene expression; Microbiology; Gene Expression