Yeast Functional Genomics : Methods and Protocols - Devaux, Frédéric.; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2016)
Using RNA-seq for Analysis of Differential Gene Expression in Fungal Species -- Enhancing Structural Annotation of Yeast Genomes with RNA-Seq Data -- Pathogen Gene Expression Profiling During Infection Using a Nanostring Ncounter Platform -- Comparative Transcriptomics in Yeasts -- Mapping the Transcriptome-Wide Landscape of RBP Binding sites using gPAR-CLIP-seq: Experimental Procedures -- Mapping the Transcriptome-wide Landscape of RBP Binding Sites using gPAR-CLIP-seq: Bioinformatic Analysis -- Translation Analysis at the Genome Scale by Ribosome Profiling -- Biotin-Genomic Run-on (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast -- Genome-wide Probing of RNA Structures in Vitro Using Nucleases and Deep Sequencing -- Genome-wide Chromatin Immunoprecipitation in Candida albicans and other Yeasts -- ChIPseq in Yeast Species: from Chromatin Immumoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses -- Systematic Determination of Transcription factor DNA-binding Specificities in Yeast -- Generation and Analysis of Chromosomal Contact Maps of Yeast Species -- A Versatile Procedure to Generate Genome-Wide Spatio-Temporal Program of Replication in Yeast Species -- Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae -- Label-Free Quantitative Proteomics in Yeast -- Profiling of Yeast Lipids by Shotgun Lipidomics -- Identification of Links between Cellular Pathways by Genetic Interaction Mapping (GIM) -- On The Mapping of Epistatic Genetic Interactions in Natural Isolates: Combining Classical Genetics and Genomics -- Experimental Evolution and Resequencing Analysis of Yeast -- Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs using Arboretum -- Predicting Gene and Genomic Regulation in Saccharomyces cerevisiae, using the YEASTRACT Database: A Step By Step Guided Analysis.
Keywords: Microbiology; Gene expression; Microbiology; Gene Expression