Viral Metagenomics : Methods and Protocols - Pantaleo, Vitantonio; Chiumenti, Michela; SpringerLink (Online service) (New York, NY : Springer New York : Imprint: Humana, 2018)
Host-Associated Bacteriophage Isolation and Preparation for Viral Metagenomics -- SmallRNAs Isolation from Tissues of Grapevine and Woody Plants -- Double Stranded RNA-Enriched Preparations to Identify Viroids by Next Generation Sequencing -- Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing -- Work-Up of Human Blood Samples for Deep Sequencing of HIV-1 Genomes -- Monolith Chromatography as Sample Preparation Step in Virome Studies of Water Samples -- Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral Communities -- Different Approaches to Discover Mycovirus Associated to Marine Organisms -- Use of siRNAs for Diagnosis of Viruses Associated to Woody Plants in Nurseries and Stock Collections -- The Use of High Throughput Sequencing for the Study and Diagnosis of Plant Viruses and Viroids in Pollen -- High-Resolution Screening of Viral Communities and Identification of New Pathogens in Fish Using Next Generation Sequencing -- Metagenomic Analyses of the Viruses Detected in Mycorrhizal Fungi and their Host Orchid -- DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method -- From Whole Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool -- Shannon Entropy to Evaluate Substitution Rate Variation among Viral Nucleotide Positions in Datasets of Viral siRNAs -- Insect Virus Discovery by Metagenomic and Cell Culture-Based Approaches.
Keywords: Plant science; Botany; Plant Sciences