Protein Structure Prediction Methods and Protocols - Webster, David; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2000)
Multiple Sequence Alignment -- Protein Structure Comparison Using SAP -- Discovering Patterns Conserved in Sets of Unaligned Protein Sequences -- Identification of Domains from Protein Sequences -- Third Generation Prediction of Secondary Structures -- Comparative Protein Structure Modeling: Introduction and Practical Examples with Modeller -- A Practical Guide to Protein Structure Prediction -- Derivation and Testing Residue-Residue Mean-Force Potentials for Use in Protein Structure Prediction -- Genetic Algorithms and Protein Folding -- Scoring Functions for ab initio Protein Structure Prediction -- Ab Initio Loop Modeling and Its Application to Homology Modeling -- The Dead-End Elimination Theorem: -- Classification of Protein Folds -- Modeling Transmembrane Helix Bundles by Restrained MD Simulations -- Predictive Models of Protein-Active Sites -- Flexible Docking of Peptide Ligands to Proteins -- Geometrical Docking Algorithms: A Practical Approach -- Protein-Protein Docking: Generation and Filtering of Complexes.
Keywords: Biochemistry; Biochemistry, general