Protein Structure Prediction - Zaki, Mohammed; Bystroff, Chris; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2008)
Preface -- Contributors -- I: Overview of Protein Structure Prediction -- A Historical Perspective of Template-Based Protein Structure PredictionJun-tao Guo, Kyle Ellrott, and Ying Xu -- The Assessment of Methods for Protein Structure PredictionAnna Tramontano, Domenico Cozzetto, Alejandro Giorgetti, and Domenico Raimondo -- II: Template-based Methods -- Aligning Sequences to StructuresLiam James McGuffin -- Protein Structure Prediction Using ThreadingJinbo Xu, Feng Jiao, and Libo Yu -- III: Structure Alignment and Indexing -- Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence AlignmentMaxim Shatsky, Ruth Nussinov, and Haim J. Wolfson -- Indexing Protein Structures Using Suffix TreesFeng Gao and Mohammed J. Zaki -- IV: Protein Features Prediction -- Hidden Markov Models for Prediction of Protein FeaturesBystroff and Krogh -- The Pros and Cons of Predicting Protein Contact MapsLisa Bartoli, Emidio Capriotti, Piero Fariselli, Pier Luigi Martelli, and Rita Casadio -- Road Map Methods for Protein FoldingMark Moll, David Schwarz, and Lydia E. Kavraki -- Scoring Functions for De Novo Protein Structure Prediction RevisitedShing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, and Ram Samudrala -- Protein--Protein Docking: Overview and Performance AnalysisKevin Wiehe, Matthew W. Peterson, Brian Pierce, Julian Mintseris, and Zhiping Weng -- Molecular Dynamics Simulations of Protein FoldingAngel E. Garcia.
Keywords: Proteins .; Biochemistry; Proteomics; Protein Science; Biochemistry, general; Proteomics