Protein Networks and Pathway Analysis - Nikolsky, Yuri.; Bryant, Julie; SpringerLink (Online service) (Totowa, NJ : Humana Press : Imprint: Humana, 2009)
I: Interactions -- Mining Protein-Protein Interactions from Published Literature Using Linguamatics I2E -- Relative Avidity, Specificity, and Sensitivity of Transcription Factor-DNA Binding in Genome-Scale Experiments -- Curation of Inhibitor-Target Data: Process and Impact on Pathway Analysis -- Profiling Protein Interaction Networks with Functional Protein Microarrays -- Manual Annotation of Protein Interactions -- II: Analysis -- Gene Set Enrichment Analysis -- PANTHER Pathway: An Ontology-Based Pathway Database Coupled with Data Analysis Tools -- Prioritizing Genes for Pathway Impact Using Network Analysis -- Discovering Biological Networks from Diverse Functional Genomic Data -- Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform -- Kinetic Modeling as a Tool to Integrate Multilevel Dynamic Experimental Data -- Cytoscape: A Community-Based Framework for Network Modeling -- Semantic Data Integration and Knowledge Management to Represent Biological Network Associations -- Solutions for Complex, Multi Data Type and Multi Tool Analysis: Principles and Applications of Using Workflow and Pipelining Methods -- III: Applications -- High-Throughput siRNA Screening as a Method of Perturbation of Biological Systems and Identification of Targeted Pathways Coupled with Compound Screening -- Pathway and Network Analysis with High-Density Allelic Association Data -- miRNAs: From Biogenesis to Networks -- MetaMiner (CF): A Disease-Oriented Bioinformatics Analysis Environment -- Translational Research and Biomedical Informatics -- ArrayTrack: An FDA and Public Genomic Tool.
Keywords: Proteins .; Bioinformatics .; Computational biology .; Protein Science; Computer Appl. in Life Sciences