Bacterial Pangenomics : Methods and Protocols /
| Autor Corporativo: | |
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| Otros Autores: | , , |
| Formato: | eBook |
| Lenguaje: | English |
| Publicado: |
New York, NY :
Springer New York : Imprint: Humana,
2015.
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| Edición: | 1st ed. 2015. |
| Colección: | Methods in Molecular Biology,
1231 |
| Materias: |
Tabla de Contenidos:
- Pulsed Field Gel Electrophoresis and Genome Size Estimates
- Comparative Analyses of Extrachromosomal Bacterial Replicons, Identification of Chromids and Experimental Evaluation of their Indispensability
- Choice of Next Generation Sequencin Pipelines
- The Pyrosequencing Protocol for Bacterial Genomes
- Bacterial Metabarcoding by 16S rRNA Gene Ion Torrent Amplicon Sequencing
- The Ilumina-Solexa Sequencing Protocol for Bacterial Genomes
- High-Throughput Phenomics
- Comparative Analysis of Gene Expression: Uncovering Expression Conservation and Divergence between Salmonella enterica serovar Typhimurium strains LT2 and 14028S
- Raw Sequence Data and Quality Control
- Methods for Assembling Reads and Producing Contigs
- Mapping Contigs Using CONTIGuator
- Gene Calling and Bacterial Genome Annotation with BG7
- Defining Orthologs and Pangenome Size Metrics
- Robust Identification of Orthologues and Paralogues for Microbial Pan-Genomics Using GET_HOMOLOGUES: A Case Study of pIncA/C Plasmids
- Genome-Scale Metabolic Networks Reconstruction
- From Pangenome to Phanphenome and Back
- Genome-Wide Detection of Selection and Other Evolutionary Forces
- The Integrated Microbial Genome Resource of Analysis.