Bioinformatics for DNA Sequence Analysis /
| Corporate Author: | |
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| Other Authors: | |
| Format: | eBook |
| Language: | English |
| Published: |
Totowa, NJ :
Humana Press : Imprint: Humana,
2009.
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| Edition: | 1st ed. 2009. |
| Series: | Methods in Molecular Biology,
537 |
| Subjects: |
Table of Contents:
- Similarity Searching Using BLAST
- Gene Orthology Assessment with OrthologID
- Multiple Alignment of DNA Sequences with MAFFT
- SeqVis: A Tool for Detecting Compositional Heterogeneity Among Aligned Nucleotide Sequences
- Selection of Models of DNA Evolution with jModelTest
- Estimating Maximum Likelihood Phylogenies with PhyML
- Trees from Trees: Construction of Phylogenetic Supertrees Using Clann
- Detecting Signatures of Selection from DNA Sequences Using Datamonkey
- Recombination Detection and Analysis Using RDP3
- CodonExplorer: An Interactive Online Database for the Analysis of Codon Usage and Sequence Composition
- Genetic Code Prediction for Metazoan Mitochondria with GenDecoder
- Computational Gene Annotation in New Genome Assemblies Using GeneID
- Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM
- Analysis of Genomic DNA with the UCSC Genome Browser
- Mining for SNPs and SSRs Using SNPServer, dbSNP and SSR Taxonomy Tree
- Analysis of Transposable Element Sequences Using CENSOR and RepeatMasker
- DNA Sequence Polymorphism Analysis Using DnaSP.