Gene Prediction : Methods and Protocols /
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY :
Springer New York : Imprint: Humana,
2019.
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| Edition: | 1st ed. 2019. |
| Series: | Methods in Molecular Biology,
1962 |
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Table of Contents:
- tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences
- Predicting RNA Families In Nucleotides Sequences Using StructRNAfinder
- Structural and Functional Annotation of Eukaryotic Genomes with GenSAS
- Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-seq Reads by FunGAP
- Whole-Genome Annotation with BRAKER
- EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes
- ChemGenome2.1: An ab initio Gene Prediction Software
- Multi-Genome Annotation with AUGUSTUS
- GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data
- Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene Annotation
- Predicting Genes in Closely Related Species with Scipio and WebScipio
- AnABlast, Re-Searching for Protein-Coding Sequences in Genomic Regions
- Generating Publication-Ready Prokaryotic Genome Annotations with DFAST
- BUSCO: Assessing Genome Assembly and Annotation Completeness
- Evaluating Genome Assemblies and Gene Models using gVolante
- Choosing the Best Gene Predictions with GeneValidator
- COGNATE: Comparative Gene Annotation Characterizer.