Plant Long Non-Coding RNAs : Methods and Protocols /

Detalles Bibliográficos
Autor Corporativo: SpringerLink (Online service)
Otros Autores: Chekanova, Julia A. (Editor ), Wang, Hsiao-Lin V. (Editor )
Formato: eBook
Lenguaje:English
Publicado: New York, NY : Springer New York : Imprint: Humana, 2019.
Edición:1st ed. 2019.
Colección:Methods in Molecular Biology, 1933
Materias:
Tabla de Contenidos:
  • An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK!
  • Analysis of siRNA Precursors Generated by RNA Polymerase IV and RNA-Dependent RNA Polymerase 2 in Arabidopsis
  • Identification of Long Non-Coding RNAs in the Developing Endosperm of Maize
  • RNA Isolation and Analysis of lncRNAs from Gametophytes of Maize
  • Improved Method of RNA Isolation from Laser Capture Microdissection (LCM) Derived-Plant Tissues
  • Medium Throughput RNA In Situ Hybridization of Serial Sections from Paraffin-Embedded Tissue Microarrays
  • Purification and Functional Analysis of Plant Long Non-Coding RNAs (lncRNA)
  • The Involvement of Long Non-Coding RNAs in Response to Plant Stress
  • Subcellular Localization and Functions of Plant lncRNAs in Drought and Salt Stress Tolerance
  • Discovery, Identification, and Functional Characterization of Plant Long Intergenic Non-Coding RNAs after Virus Infection
  • Bioinformatics Approaches to Studying Plant Long Non-Coding RNAs (lncRNAs): Identification and Functional Interpretation of lncRNAs from RNA-seq Data Sets
  • Identification of Novel lincRNA and Co-Expression Network Analysis using RNA Sequencing Data in Plants
  • An Easy-to-Follow Pipeline for Long Non-Coding RNA Identification: A Case Study in Diploid Strawberry Fragaria vesca
  • Reference-Based Identification of Long Non-Coding RNAs in Plants with Strand-Specific RNA-Sequencing Data
  • NAMS: Non-Coding Assessment in Magnoliophyta Species
  • De novo Plant Transcriptome Assembly and Annotation using Illumina RNA-seq Reads
  • Identification of Long Non-Coding RNA-Protein Interactions through In Vitro RNA Pull-Down Assay with Plant Nuclear Extracts
  • Analysis of Interaction between Long Non-Coding RNAs and Protein by RNA-Immunoprecipitation in Arabidopsis
  • Trimolecular Fluorescence Complementation (TriFC) Assay for Visualization of RNA-Protein Interaction in Plants
  • In Vivo Genome-Wide RNA Structure Probing with Structure-seq2
  • Using Protein Interaction Profile Sequencing (PIP-seq) to Identify RNA Secondary Structure and RNA-Protein Interaction Sites of Long Non-Coding RNAs in Plants
  • Computationally Characterizing Protein Bound Long Non-Coding RNAs and their Secondary Structure using Protein Interaction Profile Sequencing (PIP-seq) in Plants
  • Stalking Structure in Plant Long Non-Coding RNAs
  • Transcriptome-Wide Mapping 5-methylcytosine by m5C RNA Immunoprecipitation Followed by Deep Sequencing in Plant
  • A Walkthrough to the Use of GreeNC: The Plant lncRNA Database
  • CANTATAdb 2.0: Expanding the Collection of Plant Long Non-Coding RNAs
  • Experimentally Validated Plant lncRNAs in EVLncRNAs Database
  • In Situ Hi-C for Plants: An Improved Method to Detect Long-Range Chromatin Interactions.