Statistical Genomics : Methods and Protocols /
| Corporate Author: | |
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| Other Authors: | , |
| Format: | eBook |
| Language: | English |
| Published: |
New York, NY :
Springer New York : Imprint: Humana,
2016.
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| Edition: | 1st ed. 2016. |
| Series: | Methods in Molecular Biology,
1418 |
| Subjects: |
Table of Contents:
- Overview of Sequence Data Formats
- Integrative Exploratory Analysis of Two or More Genomic Datasets
- Study Design for Sequencing Studies
- Genomic Annotation Resources in R/Bioconductor
- The Gene Expression Omnibus Database
- A Practical Guide to the Cancer Genome Atlas (TCGA)
- Working with Oligonucleotide Arrays
- Meta-Analysis in Gene Expression Studies
- Practical Analysis of Genome Contact Interaction Experiments
- Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data
- Variant Calling From Next Generation Sequence Data
- Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes
- NGS-QC Generator: A Quality Control System for ChIP-seq and Related Deep Sequencing-Generated Datasets
- Operating on Genomic Ranges Using BEDOPS
- GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality
- Visualizing Genomic Data using Gviz and Bioconductor
- Introducing Machine Learning Concepts with WEKA
- Experimental Design and Power Calculation for RNA-Seq Experiments
- It's DE-licious: A Recipe for Differential Expression Analyses of RNA-Seq Experiments Using Quasi-Likelihood Methods in EdgeR.