Protein Structure Prediction
| Corporate Author: | |
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| Other Authors: | , |
| Format: | eBook |
| Language: | English |
| Published: |
Totowa, NJ :
Humana Press : Imprint: Humana,
2008.
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| Edition: | 2nd ed. 2008. |
| Series: | Methods in Molecular Biology,
413 |
| Subjects: | |
| Online Access: | https://doi.org/10.1007/978-1-59745-574-9 |
Table of Contents:
- Preface
- Contributors
- I: Overview of Protein Structure Prediction
- A Historical Perspective of Template-Based Protein Structure PredictionJun-tao Guo, Kyle Ellrott, and Ying Xu
- The Assessment of Methods for Protein Structure PredictionAnna Tramontano, Domenico Cozzetto, Alejandro Giorgetti, and Domenico Raimondo
- II: Template-based Methods
- Aligning Sequences to StructuresLiam James McGuffin
- Protein Structure Prediction Using ThreadingJinbo Xu, Feng Jiao, and Libo Yu
- III: Structure Alignment and Indexing
- Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence AlignmentMaxim Shatsky, Ruth Nussinov, and Haim J. Wolfson
- Indexing Protein Structures Using Suffix TreesFeng Gao and Mohammed J. Zaki
- IV: Protein Features Prediction
- Hidden Markov Models for Prediction of Protein FeaturesBystroff and Krogh
- The Pros and Cons of Predicting Protein Contact MapsLisa Bartoli, Emidio Capriotti, Piero Fariselli, Pier Luigi Martelli, and Rita Casadio
- Road Map Methods for Protein FoldingMark Moll, David Schwarz, and Lydia E. Kavraki
- Scoring Functions for De Novo Protein Structure Prediction RevisitedShing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, and Ram Samudrala
- Protein
- Protein Docking: Overview and Performance AnalysisKevin Wiehe, Matthew W. Peterson, Brian Pierce, Julian Mintseris, and Zhiping Weng
- Molecular Dynamics Simulations of Protein FoldingAngel E. Garcia.