Copy Number Variants : Methods and Protocols /
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY :
Springer New York : Imprint: Humana,
2018.
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| Edition: | 1st ed. 2018. |
| Series: | Methods in Molecular Biology,
1833 |
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Table of Contents:
- Identification of Copy Number Variants from SNP Arrays using PennCNV
- Using SAAS-CNV to Detect and Characterize Somatic Copy Number Alterations in Cancer Genomes from Next Generation Sequencing and SNP Array Data
- Statistical Detection of Genome Differences Based on CNV Segment
- Whole Genome Shotgun Sequence CNV Detection using Read Depth
- Read Depth Analysis to Identify CNV in Bacteria using CNOGpro
- Using HaMMLET for Bayesian Segmentation of WGS read-depth Data
- Split-Read InDel and Structural Variant Calling Using PINDEL
- Detecting Small Inversions using SRinversion
- Detection of CNVs in NGS data using VS-CNV
- Structural Variant Breakpoint Detection with novoBreak
- Use of RAPTR-SV to Identify SVs from Read Pairing and Split Read Signatures
- Versatile Identification of Copy Number Variants with Canvas
- Analysis of Population-genetic Properties of Copy Number Variations
- Validation of Genomic Structural Variants through Long Sequencing Technologies
- Structural Variation Detection and Analysis using Bionano Optical Mapping.