Enhancer RNAs : Methods and Protocols /
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| Format: | eBook |
| Language: | English |
| Published: |
New York, NY :
Springer New York : Imprint: Humana,
2017.
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| Edition: | 1st ed. 2017. |
| Series: | Methods in Molecular Biology,
1468 |
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Table of Contents:
- Cellular Fractionation and Isolation of Chromatin-associated RNA
- Knockdown of Nuclear-located Enhancer RNAs and Long ncRNAs using Locked Nucleic Acid GapmeRs
- Visualization of Enhancer-derived Non-coding RNA
- UV-RNA Immunoprecipitation (UV-RIP) Protocol in Neurons
- Mapping Long non-coding RNA Chromatin Occupancy using Capture Hybridization Analysis of RNA Targets (CHART)
- Detecting long-range Enhancer-promoter Interactions by Quantitative Chromosome Conformation Capture
- Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET)
- Identification of Transcribed Enhancers by Genome-wide Chromatin Immunoprecipitation Sequencing
- Global Run-On sequencing (GRO-seq)
- Computational Approaches for Mining GRO-seq Data to Identify and Characterize Active Enhancers
- Evaluating the Stability of mRNAs and Non-coding RNAs
- A Novel Method to Quantify RNA-protein Interactions in situ using FMTRIP and Proximity Ligation
- In silico Promoter Recognition from deepCAGE data
- Bioinformatics Pipeline for Transcriptome Sequencing Analysis
- CRISPR/Cas-9 Genome Editing in Embryonic Stem Cells
- Targeted Gene Activation Using RNA-Guided Nucleases.