The Ubiquitin Proteasome System : Methods and Protocols /

Detalles Bibliográficos
Autor Corporativo: SpringerLink (Online service)
Otros Autores: Mayor, Thibault. (Editor ), Kleiger, Gary. (Editor )
Formato: eBook
Lenguaje:English
Publicado: New York, NY : Springer New York : Imprint: Humana, 2018.
Edición:1st ed. 2018.
Colección:Methods in Molecular Biology, 1844
Materias:
Tabla de Contenidos:
  • Characterization of RING-Between-RING E3 Ubiquitin Transfer Mechanisms
  • Single Turnover RING/U-Box E3-Mediated Lysine Discharge Assays
  • Methods for NAD-Dependent Ubiquitination Catalyzed by Legionella pneumophila Effector Proteins
  • Using In Vitro Ubiquitylation Assays to Estimate the Affinities of Ubiquitin-Conjugating Enzymes for their Ubiquitin Ligase Partners
  • Competition Assay for Measuring Deubiquitinating Enzyme Substrate Affinity
  • Enzymatic Assembly of Ubiquitin Chains
  • Ubiquitin-Activated Interaction Traps (UBAITs): Tools for Capturing Protein-Protein Interactions
  • Generating Intracellular Modulators of E3 Ligases and Deubiquitinases from Phage-Displayed Ubiquitin Variant Libraries
  • Integrated Proteogenomic Approach for Identifying Degradation Motifs in Eukaryotic Cells
  • A Method to Monitor Protein Turnover by Flow Cytometry and to Screen for Factors that Control Degradation by Fluorescence-Activated Cell Sorting
  • E. coli Based Selection and Expression Systems for Discovery, Characterization, and Purification of Ubiquitylated Proteins
  • Strategies to Trap Enzyme-Substrate Complexes that Mimic Michaelis Intermediates during E3-Mediated Ubiquitin-Like Protein Ligation
  • Small-Angle X-Ray Scattering for the Study of Proteins in the Ubiquitin Pathway
  • Methods for Preparing Cryo-EM Grids of Large Macromolecular Complexes
  • Recombinant Expression, Unnatural Amino-Acid Incorporation, and Site-Specific Labeling of 26S Proteasomal Subcomplexes
  • Native Gel Approaches in Studying Proteasome Assembly and Chaperones
  • Measuring the Overall Rate of Protein Breakdown in Cells and the Contributions of the Ubiquitin-Proteasome and Autophagy-Lysosomal Pathways
  • Methods to Rapidly Prepare Mammalian 26S Proteasomes for Biochemical Analysis
  • Measurement of the Multiple Activities of 26S Proteasomes
  • Exploring the Regulation of Proteasome Function by Subunit Phosphorylation
  • Scalable In Vitro Proteasome Activity Assay
  • Exploring the Rampant Expansion of Ubiquitin Proteomics
  • Ubiquitin diGLY Proteomics as an Approach to Identify and Quantify the Ubiquitin-Modified Proteome
  • Interpreting the Language of Polyubiquitin with Linkage-Specific Antibodies and Mass Spectrometry
  • Dissecting Dynamic and Heterogeneous Proteasome Complexes Using In Vivo Cross-Linking Assisted Affinity Purification and Mass Spectrometry.